III. With Geno, Maf and LD Pruning
[ Raw: I ] [ With Maf / LD Pruning: II ] [ With Maf / LD Pruning / Geno: III: K 2 ] [ III: K 11 ] [ III: K 20 ] [ III: K 40 ] [ III: K 50 ] [ III: K 64 ] [ III: K Overclustering ] [ With SGDP Plus: IV: K 10, 20, 40, 50, 64 ] [ Interpretion Methods Results ]
III. With Geno, Maf and LD Pruning
Admixture, K = 2-15, 20, 30, 40, 50, 57-66, 68, 72, 80, Simons Genome Diversity Project = SGDP, plink1.9 --bfile merged2 --geno 0.05 --maf 0.05 --make-bed --out filtered_maf, plink1.9 --bfile filtered_maf --indep-pairwise 50 10 0.2 --out pruned, plink1.9 --bfile filtered_maf --extract pruned.prune.in --make-bed --out final_dataset_geno, final_dataset_geno.log = "514884 variants loaded from .bim file. Total genotyping rate is 0.999319. 137857 variants and 346 people pass filters and QC".
[ A ] AMD : AFR - 75 : 25
K = 2, "SampleName" = 0.235205 0.764795, CV error (K=2) 0.59424, Loglikelihood: -49045736.668625, Fst divergences between estimated populations: Pop1-Pop0 0.134.
=== Cluster 0 === 23,5% AFR
Khomani_San 0.999990, BantuTswana 0.999990, Ju_hoan_North 0.999990, Yoruba 0.999990, Kongo 0.999990, Lemande 0.999990, Esan 0.999990
=== Cluster 1 === 76,5% AMD
Zapotec 0.999990, Han 0.999990, Chane 0.999990, Chipewyan 0.999990, Quechua 0.999990, Eskimo_Naukan 0.999990, Eskimo_Sireniki 0.999990
[ B ] EUR 90+ : AMD Drift
K = 3, "SampleName" = 0.008898 0.000010 0.991092, CV error (K=3) 0.57642, Loglikelihood: -48022713.984481, Fst divergences between estimated populations: Pop1-Pop0 0.139, Pop2-Pop0 0.081, Pop2-Pop1 0.125.
=== Cluster 0 === 0,89% AMD
Mixe 0.999980, Karitiana 0.999980, Surui 0.999980, Eskimo_Chaplin 0.999980, Miao 0.999980, Hezhen 0.999980, Igorot 0.999980
=== Cluster 1 === AFR
Khomani_San 0.999980, Mbuti 0.999980, Biaka 0.999980, BantuTswana 0.999980, Lemande 0.999980, Bakola 0.999980, Baka 0.999980
=== Cluster 2 === 99,11% EUR
Albanian 0.999980, Basque 0.999980, Bergamo 0.999980, Sardinian 0.998426, English 0.996291, Tuscan 0.996150, Greek 0.994109
K = 4, "SampleName" = 0.985796 0.000010 0.000010 0.014184, CV error (K=4) 0.56658, Loglikelihood: -47330314.319648.
=== Cluster 0 === 98,58% EUR
Basque 0.999970, Albanian 0.999652, Sardinian 0.998369, Bergamo 0.997304, Tuscan 0.993943, English 0.993313, Greek 0.992884
=== Cluster 1 === AFR
Khomani_San 0.999970, Lemande 0.999970, Esan 0.999970, Biaka 0.999970, Bedzan 0.999970, BantuTswana 0.999970, Tikar_South 0.999970
=== Cluster 2 === OCR-AUS
Papuan 0.999970, Australian 0.846618, Bougainville 0.731240, Onge 0.277394, Hawaiian 0.234150, Khonda_Dora 0.213286, Kurumba 0.207622
=== Cluster 3 === 1,42% AMD
Surui 0.999970, Mayan 0.999970, Nahua 0.999970, Piapoco 0.999970, Pima 0.999970, Chane 0.999970, Karitiana 0.999970
K = 5, first run, "SampleName" = 0.000010 0.965348 0.000010 0.000010 0.034622, CV error (K=5) 0.56007, Converged in 22 iterations (142.017 sec), Loglikelihood: -46811291.328097.
K = 5, second run, "SampleName" = 0.000010 0.965348 0.000010 0.000010 0.034622, CV error (K=5) 0.56007, Converged in 22 iterations (142.607 sec), Loglikelihood: -46811291.328097.
=== Cluster 0 === AFR
Khomani_San 0.999960, Lemande 0.999960, Bedzan 0.999960, Bakola 0.999960, Baka 0.999960, Mbuti 0.999960, Esan 0.999960
=== Cluster 1 === 96,53% EUR
Sardinian 0.997704, Basque 0.989665, Albanian 0.987953, Greek 0.985435, Tuscan 0.984699, Bergamo 0.984581, English 0.975317
=== Cluster 2 === OCR-AUS
Papuan 0.999960, Australian 0.808563, Bougainville 0.668171, Onge 0.176079, Kurumba 0.132275, Mala 0.113220, Khonda_Dora 0.108099
=== Cluster 3 === EAS
Atayal 0.999960, Igorot 0.999960, Ami 0.999960, She 0.999960, Tujia 0.998859, Miao 0.998618, Dai 0.997722
=== Cluster 4 === 3,46% AMD
Mixe 0.999960, Mayan 0.999960, Surui 0.999960, Chane 0.999960, Nahua 0.999960, Piapoco 0.999960, Pima 0.999960
K = 6, "SampleName" = 0.000010 0.965363 0.000010 0.034597 0.000010 0.000010, CV error (K=6) 0.56195, Loglikelihood: -46598419.952126.
=== Cluster 0 === OCR-AUS
Papuan 0.999949, Australian 0.808315, Bougainville 0.667932, Onge 0.176089, Kurumba 0.132130, Mala 0.113038, Khonda_Dora 0.107969
=== Cluster 1 === 96,54% EUR
Sardinian 0.996123, Basque 0.989510, Albanian 0.987767, Greek 0.984154, Bergamo 0.984140, Tuscan 0.982829, English 0.975357
=== Cluster 2 === EAS
Ami 0.999950, Igorot 0.999950, She 0.999950, Atayal 0.999950, Tujia 0.998856, Miao 0.998598, Dai 0.997709
=== Cluster 3 === 3,45% AMD
Surui 0.999950, Mixe 0.999950, Chane 0.999950, Nahua 0.999950, Piapoco 0.999950, Pima 0.999950, Karitiana 0.999950
=== Cluster 4 === S-AFR
Khomani_San 0.999950, Ju_hoan_North 0.999950, Mbuti 0.614828, Bakola 0.424548, Biaka 0.419268, Baka 0.395563, Bedzan 0.375159
=== Cluster 5 === W-AFR
Mada 0.993051, Yoruba 0.981544, Laka 0.974293, Kaba 0.973777, Dinka 0.970675, Mandenka 0.969086, Esan 0.965114
K = 7, "SampleName" = 0.000010 0.000010 0.045330 0.950414 0.000010 0.000010 0.004216, CV error (K=7) 0.56147, Loglikelihood: -46398579.788798.
=== Cluster 0 === IND
Mala 0.981600, Irula 0.979910, Madiga 0.957664, Kurumba 0.897681, Yadava 0.881297, Relli 0.879737, Kapu 0.859306
=== Cluster 1 === S-AFR
Khomani_San 0.999940, Ju_hoan_North 0.999940, Mbuti 0.614390, Bakola 0.424167, Biaka 0.418862, Baka 0.395020, Bedzan 0.374674,
=== Cluster 2 === 4,53% AMD
Chane 0.999940, Karitiana 0.999940, Mayan 0.999940, Nahua 0.999940, Piapoco 0.999940, Pima 0.999940, Mixe 0.999937
=== Cluster 3 === 95,04% EUR
Sardinian 0.991143, Basque 0.976241, Bergamo 0.964596, Albanian 0.957067, Spanish 0.954795, English 0.952175, French 0.950548
=== Cluster 4 === EAR
Ami 0.999940, She 0.999940, Atayal 0.999940, Igorot 0.999939, Tujia 0.998278, Miao 0.998277, Han 0.997322,
=== Cluster 5 === W-AFR
Mada 0.992728, Yoruba 0.981872, Laka 0.974584, Kaba 0.974154, Dinka 0.969209, Mandenka 0.968827, Esan 0.965301
=== Cluster 6 === 0,42% OCR-AUS
Papuan 0.999940, Australian 0.782684, Bougainville 0.652197, Onge 0.107634, Maori 0.105011, Hawaiian 0.069451, Kurumba 0.039136
K = 8, "SampleName" = 0.006642 0.947344 0.000010 0.043116 0.000010 0.002858 0.000010 0.000010, CV error (K=8) 0.56230, Loglikelihood: -46266546.295239.
=== Cluster 0 === 0,66% OCR-AUS
Papuan 0.999930, Australian 0.782258, Bougainville 0.651999, Onge 0.106120, Maori 0.105661, Hawaiian 0.069624, Kurumba 0.037628
=== Cluster 1 === 94,73% EUR
Basque 0.970897, Sardinian 0.966388, English 0.949912, Bergamo 0.949615, French 0.947558, [SampleName] 0.947344, Albanian 0.944218
=== Cluster 2 === KUSH
Aari 0.790647, Somali 0.782610, Rendille 0.735291, Ogiek 0.718220, Sengwer 0.716181, Iraqw 0.689611, Masai 0.670395
=== Cluster 3 === 4,31% AMD
Chane 0.999930, Karitiana 0.999930, Mayan 0.999930, Mixe 0.999930, Nahua 0.999930, Surui 0.999930, Pima 0.999930
=== Cluster 4 === S-AFR
Ju_hoan_North 0.999929, Khomani_San 0.999928, Mbuti 0.580890, Bakola 0.381599, Biaka 0.374569, Baka 0.352682, Bedzan 0.332162
=== Cluster 5 ===0,29% W-AFR
Yoruba 0.999930, Esan 0.993006, Igbo 0.988530, Lemande 0.978418, Mende 0.974087, Tikar_South 0.963879, Kongo 0.957702
=== Cluster 6 === IND
Mala 0.981232, Irula 0.980452, Madiga 0.958426, Kurumba 0.901172, Relli 0.879357, Yadava 0.879059, Kapu 0.858900
=== Cluster 7 === EAS
Ami 0.999930, Atayal 0.999930, She 0.999930, Igorot 0.999930, Tujia 0.998320, Miao 0.998296, Han 0.997363
K = 9, "SampleName" = 0.000010 0.940044 0.000010 0.000010 0.029516 0.026180 0.000571 0.000010 0.003649, CV error (K=9) 0.56312, Loglikelihood: -46111812.267651.
=== Cluster 0 === EAS
Igorot 0.999920, Ami 0.999920, Atayal 0.999920, Dai 0.995183, Dusun 0.982737, Kinh 0.956538, Lahu 0.934986
=== Cluster 1 === 94,0% EUR
Sardinian 0.967960, Basque 0.964819, Bergamo 0.947324, English 0.944717, Albanian 0.944671, French 0.943752, [SampleName] 0.940044
=== Cluster 2 === S-AFR
Khomani_San 0.999920, Ju_hoan_North 0.999915, Mbuti 0.580935, Bakola 0.381711, Biaka 0.374704, Baka 0.352793, Bedzan 0.332310
=== Cluster 3 === IND
Irula 0.982957, Mala 0.982241, Madiga 0.959805, Kurumba 0.900663, Yadava 0.883359, Relli 0.879606, Kapu 0.859840
=== Cluster 4 ===2,95% ARCTIC
Itelman 0.964278, Eskimo_Chaplin 0.796410, Eskimo_Sireniki 0.781683, Eskimo_Naukan 0.765002, Even 0.704717, Oroqen 0.641952, Ulchi 0.627312
=== Cluster 5 === 2,62% AMD
Mixe 0.999920, Chane 0.999920, Surui 0.999920, Piapoco 0.999919, Karitiana 0.999919, Mayan 0.998320, Nahua 0.993941
=== Cluster 6 === 0,06% W-AFR
Yoruba 0.999920, Esan 0.992795, Igbo 0.988109, Lemande 0.977962, Mende 0.973792, Tikar_South 0.962590, Kongo 0.957301
=== Cluster 7 === KUSH
Aari 0.793036, Somali 0.781569, Rendille 0.740806, Sengwer 0.730399, Ogiek 0.726229, Iraqw 0.694067, Masai 0.676851
=== Cluster 8 === 0,36% OCR-AUS
Papuan 0.999917, Australian 0.781975, Bougainville 0.651499, Onge 0.105769, Maori 0.102694, Hawaiian 0.065282, Kurumba 0.038875
K = 10, "SampleName" = 0.026805 0.000010 0.004929 0.000010 0.003774 0.024455 0.000600 0.000010 0.939398 0.000010, CV error (K=10) 0.57152, Loglikelihood: -46005747.323818.
=== Cluster 0 === 2,69% ARCTIC
Itelman 0.942651, Eskimo_Chaplin 0.767681, Eskimo_Sireniki 0.752358, Eskimo_Naukan 0.733450, Even 0.730614, Oroqen 0.666087, Ulchi 0.649906
=== Cluster 1 === EAS
Ami 0.999910, Igorot 0.999910, Atayal 0.999910, Dai 0.995108, Dusun 0.982617, Kinh 0.951950, Lahu 0.930168
=== Cluster 2 === 0,49% AMD I
Karitiana 0.999905, Surui 0.275130, Piapoco 0.137140, Chane 0.119668, Quechua 0.076462, Mayan 0.057106, Czech 0.020396
=== Cluster 3 === IND
Irula 0.982721, Mala 0.982223, Madiga 0.958936, Kurumba 0.900268, Yadava 0.882236, Relli 0.879407, Kapu 0.859518
=== Cluster 4 === 0,38% OCR-AUS
Papuan 0.999908, Australian 0.781944, Bougainville 0.651455, Onge 0.105730, Maori 0.102608, Hawaiian 0.065114, Kurumba 0.038874
=== Cluster 5 === 2,45% AMD II
Pima 0.999910, Mixe 0.998622, Zapotec 0.997751, Nahua 0.984281, Mayan 0.942813, Quechua 0.910995, Chane 0.880252
=== Cluster 6 === 0,06% W-AFR
Yoruba 0.999910, Esan 0.992790, Igbo 0.988123, Lemande 0.977961, Mende 0.973804, Tikar_South 0.962578, Kongo 0.957300
=== Cluster 7 === KUSH
Aari 0.792822, Somali 0.781469, Rendille 0.740770, Sengwer 0.729702, Ogiek 0.726087, Iraqw 0.694067, Masai 0.676724
=== Cluster 8 === 93,94% EUR
Sardinian 0.967428, Basque 0.964341, Bergamo 0.946536, English 0.944195, Albanian 0.943459, French 0.943250, [SampleNAme] 0.939398
=== Cluster 9 === S-AFR
Ju_hoan_North 0.999910, Khomani_San 0.999910, Mbuti 0.580927, Bakola 0.381701, Biaka 0.374697, Baka 0.352781, Bedzan 0.332299
[ C ] EUR : LEV, 85 : 15 [ + AMD ↑]
K = 11, first run, "SampleName" = 0.000010 0.000010 0.000010 0.843807 0.000010 0.000010 0.000010 0.000010 0.156103 0.000010 0.000010, CV error (K=11) 0.56995, Converged in 45 iterations (797.262 sec), Loglikelihood: -45878936.367422.
K = 11, second run, "SampleName" = 0.000010 0.000010 0.000010 0.843807 0.000010 0.000010 0.000010 0.000010 0.156103 0.000010 0.000010, CV error (K=11) 0.56995, Converged in 45 iterations (808.718 sec), Loglikelihood: -45878936.367422.
=== Cluster 0 === EAS
Ami 0.999900, Atayal 0.999900, Igorot 0.999896, Dusun 0.997826, Hawaiian 0.922203, Dai 0.879797, Kinh 0.826538,
=== Cluster 1 === S-AFR
Yoruba 0.999900, Esan 0.990684, Igbo 0.981292, Mende 0.970395, Lemande 0.970381, Mandenka 0.953793, Kongo 0.953224
=== Cluster 2 === IND
Mala 0.979027, Irula 0.968565, Madiga 0.939990, Kurumba 0.893519, Yadava 0.871290, Relli 0.870666, Kapu 0.852494
=== Cluster 3 === 84,38% EUR
Estonian 0.982426, Finnish 0.943739, Norwegian 0.938625, Icelandic 0.904758, Russian 0.863587, Orcadian 0.854886, [SampleName] 0.843807
=== Cluster 4 === S-AFR
Ju_hoan_North 0.999900, Khomani_San 0.999899, Mbuti 0.582197, Bakola 0.383307, Biaka 0.375807, Baka 0.354086, Bedzan 0.334016
=== Cluster 5 === OCR-AUS
Papuan 0.999899, Australian 0.781448, Bougainville 0.650792, Onge 0.104591, Maori 0.098551, Hawaiian 0.064923, Kurumba 0.039492
=== Cluster 6 === KUSH
Mursi 0.948846, Sengwer 0.867803, Ogiek 0.788630, Dinka 0.770264, Aari 0.734212, Masai 0.727983, Rendille 0.697458
=== Cluster 7 === AMD
Chane 0.999900, Piapoco 0.999900, Surui 0.999900, Mixe 0.999900, Karitiana 0.999899, Mayan 0.988122, Quechua 0.971409
=== Cluster 8 === 15,61% LEV
Samaritan 0.967693, BedouinB 0.944439, Yemenite_Jew 0.922666, Iraqi_Jew 0.734819, Druze 0.726546, Jordanian 0.725336, Palestinian 0.710683
=== Cluster 9 === SIBIRIC
Oroqen 0.951461, Ulchi 0.918459, Yakut 0.875723, Even 0.870412, Hezhen 0.768134, Daur 0.675602, Xibo 0.608899
=== Cluster 10 === ARCTIC
Eskimo_Sireniki 0.999900, Eskimo_Chaplin 0.999900, Eskimo_Naukan 0.999899, Itelman 0.594661, Chipewyan 0.512744, Aleut 0.460066, Chukchi 0.376477
K = 12, "SampleName" = 0.839588 0.000010 0.000010 0.000010 0.000010 0.000010 0.006237 0.000010 0.154085 0.000010 0.000010 0.000010, CV error (K=12) 0.58217, Loglikelihood: -45758600.171668.
=== Cluster 0 === 83,96% EUR
Estonian 0.975704, Finnish 0.940270, Norwegian 0.930796, Icelandic 0.899962, Russian 0.861954, Orcadian 0.853981, English 0.840089
=== Cluster 1 === IND
Madiga 0.944537, Mala 0.942258, Irula 0.940954, Yadava 0.884517, Relli 0.862806, Kapu 0.849615, Kurumba 0.841331
=== Cluster 2 === SIBIRIC
Oroqen 0.956994, Ulchi 0.923210, Yakut 0.879990, Even 0.875945, Hezhen 0.769703, Daur 0.675925, Xibo 0.606123
=== Cluster 3 === OCR-AUS
Papuan 0.999885, Australian 0.769534, Bougainville 0.644675, Maori 0.099145, Hawaiian 0.064195, Kurumba 0.037797, Khonda_Dora 0.028548
=== Cluster 4 === KUSH
Mursi 0.955741, Sengwer 0.871223, Ogiek 0.787608, Dinka 0.776643, Aari 0.732483, Masai 0.728004, Rendille 0.695012
=== Cluster 5 === AMD
Karitiana 0.999890, Mixe 0.999890, Chane 0.999890, Surui 0.999890, Piapoco 0.999888, Mayan 0.988020, Quechua 0.971387
=== Cluster 6 === 0,62% EAS-OCR
Onge 0.999890, Australian 0.201479, Bougainville 0.062691, Kurumba 0.059854, Khonda_Dora 0.049659, Kharia 0.048994, Cambodian 0.040642
=== Cluster 7 === EAS-PCF
Ami 0.999890, Igorot 0.999890, Atayal 0.999890, Dusun 0.996858, Hawaiian 0.918249, Dai 0.880817, Kinh 0.827322
=== Cluster 8 === 15,41% LEV
Samaritan 0.962268, BedouinB 0.949997, Yemenite_Jew 0.921359, Iraqi_Jew 0.721189, Druze 0.718055, Jordanian 0.716703, Palestinian 0.702092
=== Cluster 9 === S-AFR
Ju_hoan_North 0.999890, Khomani_San 0.999888, Mbuti 0.582247, Bakola 0.383352, Biaka 0.375862, Baka 0.354131, Bedzan 0.334085
=== Cluster 10 === W-AFR
Yoruba 0.999890, Esan 0.990639, Igbo 0.981030, Mende 0.970345, Lemande 0.970036, Mandenka 0.954036, Kongo 0.953076
=== Cluster 11 === ARCTIC
Eskimo_Naukan 0.999890, Eskimo_Chaplin 0.999890, Eskimo_Sireniki 0.999888, Itelman 0.592833, Chipewyan 0.512887, Aleut 0.460336, Chukchi 0.375768
K = 13, "SampleName" = 0.000010 0.000010 0.000010 0.851850 0.000010 0.000481 0.000010 0.142342 0.000010 0.000010 0.005237 0.000010 0.000010, CV error (K=13) 0.59421, Converged in 41 iterations (964.596 sec), Loglikelihood: -45646488.648116.
=== Cluster 3 === 85,29%
Estonian 0.979461, Norwegian 0.946737, Finnish 0.938499, Icelandic 0.916759, Russian 0.868483, Orcadian 0.866726, English 0.854310
=== Cluster 5 === 0,05%
Karitiana 0.999880, Surui 0.275721, Piapoco 0.137360, Chane 0.119737, Quechua 0.076570, Mayan 0.057304, Altaian 0.018421
=== Cluster 7 === 14,23%
Samaritan 0.962107, BedouinB 0.948759, Yemenite_Jew 0.921401, Iraqi_Jew 0.717913, Druze 0.713747, Jordanian 0.711645, Palestinian 0.699317
=== Cluster 10 === 0,52%
Onge 0.999880, Australian 0.201703, Bougainville 0.063562, Kurumba 0.060575, Khonda_Dora 0.051015, Kharia 0.049504, Cambodian 0.042312
K = 14, "SampleName" = 0.000010 0.000010 0.000010 0.000010 0.000010 0.154908 0.843124 0.000778 0.000010 0.000010 0.000010 0.001091 0.000010 0.000010, CV error (K=14) 0.59330, Converged in 48 iterations (1266.33 sec), Loglikelihood: -45534391.476821.
=== Cluster 5 === 15,49%
Samaritan 0.965162, BedouinB 0.943659, Yemenite_Jew 0.921835, Iraqi_Jew 0.730297, Jordanian 0.722667, Druze 0.722514, Palestinian 0.707778
=== Cluster 6 === 84,31%
Estonian 0.979163, Finnish 0.942060, Norwegian 0.937089, Icelandic 0.903099, Russian 0.862690, Orcadian 0.855324, [SampleName] 0.843124
=== Cluster 7 === 0,08%
Australian 0.872736, Bougainville 0.327690, Onge 0.089958, Hawaiian 0.045443, Khonda_Dora 0.037792, Maori 0.031399, Kurumba 0.024811
=== Cluster 11 === 0,11%
Karitiana 0.999870, Surui 0.265423, Piapoco 0.130865, Chane 0.116525, Quechua 0.071422, Mayan 0.050639, Altaian 0.021328
[ D ] EUR 90+ : AMD Drift
K = 15, first run, "SampleName" = 0.015544 0.000010 0.002016 0.000010 0.000010 0.000010 0.927909 0.000010 0.000010 0.005116 0.000010 0.000010 0.006169 0.012571 0.030595, CV error (K=15) 0.61894, Converged in 63 iterations (1825.01 sec), Loglikelihood: -45432888.022567.
K = 15, second run, "SampleName" = 0.015544 0.000010 0.002016 0.000010 0.000010 0.000010 0.927909 0.000010 0.000010 0.005116 0.000010 0.000010 0.006169 0.012571 0.030595, CV error (K=15) 0.61894, Converged in 63 iterations (1839.46 sec), Loglikelihood: -45432888.022567.
== Cluster 0 === 1,55%
Mixe 0.999860, Pima 0.999858, Zapotec 0.986741, Nahua 0.971136, Mayan 0.884596, Quechua 0.849364, Mixtec 0.848445
=== Cluster 1 ===
Yoruba 0.999860, Esan 0.992155, Igbo 0.984147, Mandenka 0.981404, Lemande 0.964746, Mende 0.964135, Tikar_South 0.953567
=== Cluster 2 === 0,2%
Kusunda 0.999860, Sherpa 0.125422, Tibetan 0.106032, Naxi 0.062878, Tu 0.055523, Yi 0.041167, Kharia 0.040292
=== Cluster 3 ===
Madiga 0.949318, Mala 0.943563, Irula 0.941496, Yadava 0.897533, Relli 0.865102, Kapu 0.858751, Kurumba 0.832899
=== Cluster 4 ===
Somali 0.779225, Aari 0.770456, Rendille 0.730403, Ogiek 0.717967, Sengwer 0.714724, Iraqw 0.686854, Masai 0.665947
=== Cluster 5 ===
Oroqen 0.991731, Ulchi 0.978679, Yakut 0.927453, Even 0.921003, Hezhen 0.773626, Daur 0.672122, Altaian 0.591595
=== Cluster 6 === 92,79%
Sardinian 0.957176, Basque 0.953996, Bergamo 0.934046, Albanian 0.932338, English 0.932106, French 0.929568, [SampleName] 0.927909
=== Cluster 7 ===
Mbuti 0.999860, Bakola 0.395401, Biaka 0.389676, Baka 0.372506, Bedzan 0.344552, Ngumba 0.083970, Hadza 0.070067
=== Cluster 8 ===
Ju_hoan_North 0.999860, Khomani_San 0.999859, BantuTswana 0.249016, Bakola 0.141854, Biaka 0.137450, Sandawe 0.130445, Baka 0.126795
=== Cluster 9 === 0,51%
Australian 0.871095, Bougainville 0.324495, Hawaiian 0.044439, Khonda_Dora 0.034212, Maori 0.032745, Kurumba 0.020850, Irula 0.015969
=== Cluster 10 ===
Papuan 0.999859, Bougainville 0.425054, Australian 0.128769, Maori 0.077211, Hawaiian 0.032718, Kurumba 0.024036, Kharia 0.019474
=== Cluster 11 ===
Igorot 0.999860, Ami 0.999860, Atayal 0.999860, Dusun 0.991802, Hawaiian 0.912010, Dai 0.901655, Kinh 0.844411
=== Cluster 12 === 0,62%
Karitiana 0.999860, Surui 0.999858, Piapoco 0.254371, Chane 0.231877, Quechua 0.142994, Mayan 0.115274, Nahua 0.028726
=== Cluster 13 === 1,26%
Onge 0.999858, Kurumba 0.052774, Kharia 0.045675, Khonda_Dora 0.043723, Cambodian 0.037415, Mala 0.035234, Kapu 0.030206
=== Cluster 14 === 3,06%
Eskimo_Sireniki 0.999860, Eskimo_Chaplin 0.999860, Eskimo_Naukan 0.999860, Itelman 0.572698, Aleut 0.478932, Chipewyan 0.469718, Chukchi 0.396693
[ E ] EUR : LEV : AMD, 85- : 15: <1
K = 20, "SampleName" = 0.000010 0.000010 0.000010 0.834176 0.000010 0.160086 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.002283 0.000010 0.003295 0.000010 0.000010 0.000010, CV error (K=20) 0.64453, Loglikelihood: -44939778.449651.
=== Cluster 0 ===
Iraqw 0.999810, Aari 0.925182, Hadza 0.699356, Ogiek 0.667567, Masai 0.644004, Elmolo 0.612291, Somali 0.604902
=== Cluster 1 ===
Kalash 0.999810, Makrani 0.802515, Balochi 0.750853, Brahui 0.615216, Tajik 0.563605, Abkhasian 0.503730, Iranian 0.491473
=== Cluster 2 ===
Mixe 0.999810, Pima 0.999809, Zapotec 0.986702, Nahua 0.971529, Mayan 0.884548, Quechua 0.849953, Mixtec 0.847998
=== Cluster 3 === 83,42%
Estonian 0.968139, Finnish 0.934024, Norwegian 0.910836, Icelandic 0.870329, [SampleName] 0.834176, Orcadian 0.832945, Russian 0.828414
=== Cluster 4 ===
Australian 0.870653, Bougainville 0.323744, Hawaiian 0.054799, Maori 0.033228, Khonda_Dora 0.022622, Thai 0.006685, Kurumba 0.004923
=== Cluster 5 === 16,01%
BedouinB 0.992265, Samaritan 0.799168, Yemenite_Jew 0.758121, Saharawi 0.675385, Jordanian 0.621443, Druze 0.620696, Palestinian 0.620338
=== Cluster 6 ===
Papuan 0.999810, Bougainville 0.423250, Australian 0.129164, Maori 0.074559, Hawaiian 0.026708, Kurumba 0.013378, Cambodian 0.011801
=== Cluster 7 ===
Bakola 0.999810, Baka 0.999810, Bedzan 0.999810, Biaka 0.999810, Ngumba 0.182432, Kongo 0.133105, BantuHerero 0.110659,
=== Cluster 8 ===
Mandenka 0.995687, Yoruba 0.994914, Esan 0.979447, Igbo 0.963318, Gambian 0.955994, Mende 0.955284, Lemande 0.882219
=== Cluster 9 ===
Irula 0.999810, Mala 0.999810, Madiga 0.979115, Kurumba 0.931502, Relli 0.852299, Yadava 0.813674, Kapu 0.804416
=== Cluster 10 ===
Sherpa 0.999810, Tibetan 0.995059, Naxi 0.789625, Yi 0.768353, Tu 0.633799, Korean 0.606733, Tujia 0.601800
=== Cluster 11 ===
Eskimo_Sireniki 0.999810, Eskimo_Naukan 0.999810, Eskimo_Chaplin 0.999810, Itelman 0.533071, Chipewyan 0.466060, Aleut 0.451269, Chukchi 0.356385
=== Cluster 12 ===
Dinka 0.999810, Bulala 0.746885, Mursi 0.724784, Sengwer 0.519805, Mada 0.394368, Ogiek 0.284437, Masai 0.250838
=== Cluster 13 ===
Igorot 0.999810, Dusun 0.999810, Ami 0.999810, Atayal 0.999810, Hawaiian 0.918323, Dai 0.593380, Kinh 0.566777
=== Cluster 14 === 0,23%
Surui 0.999810, Karitiana 0.999810, Piapoco 0.254395, Chane 0.231722, Quechua 0.142306, Mayan 0.115272, Nahua 0.028291
=== Cluster 15 ===
Ulchi 0.999810, Oroqen 0.999810, Yakut 0.998376, Even 0.957112, Hezhen 0.604379, Daur 0.474547, Altaian 0.469010,
=== Cluster 16 === 0,33%
Onge 0.999810, Cambodian 0.030080, Thai 0.021470, Kharia 0.020739, Kurumba 0.020504, Khonda_Dora 0.019616, Burmese 0.015062
=== Cluster 17 ===
Kusunda 0.999810, Kharia 0.026049, Bengali 0.016167, Polish 0.015959, Uygur 0.013556, Estonian 0.012050, Burusho 0.011723
=== Cluster 18 ===
Mbuti 0.999809, Luo 0.040874, Hadza 0.026030, Mende 0.025507, Luhya 0.023974, Sandawe 0.020952, BantuKenya 0.019382
=== Cluster 19 ===
Khomani_San 0.999810, Ju_hoan_North 0.999810, BantuTswana 0.242737, Sandawe 0.095828, Hadza 0.059400, Aari 0.056240, BantuHerero 0.052442
[ F ] EUR : WEST MED : LEV, 75- : 24+ : <1
K = 30, "SampleName" = 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.670605 0.000010 0.000010 0.000010 0.004846 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.324279 0.000010 0.000010, CV error (K=30) 0.76483, Loglikelihood: -44089814.067007.
=== Cluster 0 ===
Sandawe 0.613857, Hadza 0.528659, Iraqw 0.097957, Aari 0.092655, Masai 0.043756, Ogiek 0.040970, Kikuyu 0.028000
=== Cluster 1 ===
Dinka 0.999710, Mursi 0.999710, Sengwer 0.698958, Bulala 0.539289, Mada 0.357239, Ogiek 0.320389, Masai 0.284206
=== Cluster 2 ===
Pima 0.999710, Chipewyan 0.999710, Cree 0.320298, Mixtec 0.033710, Altaian 0.017932, Chechen 0.015674, Tubalar 0.012075
=== Cluster 3 ===
Fulani 0.999710, Saharawi 0.084124, Mozabite 0.065665, Bulala 0.024972, Agaw 0.013682, Spanish 0.011027, Jordanian 0.009525
=== Cluster 4 ===
BedouinB 0.999710, Yemenite_Jew 0.999710, Palestinian 0.220126, Agaw 0.187742, Saharawi 0.178695, Iraqi_Jew 0.175968, Druze 0.141253
=== Cluster 5 ===
Aleut 0.999710, Tlingit 0.717592, Chukchi 0.032708, Maori 0.030641, North_Ossetian 0.021808, Cree 0.021068, Russian 0.021018
=== Cluster 6 ===
Gambian 0.999710, Mandenka 0.999710, Esan 0.677501, Mende 0.490089, Yoruba 0.322865, Igbo 0.306115, Kaba 0.289860,
=== Cluster 7 ===
Atayal 0.999710, Igorot 0.999710, Ami 0.999710, Hawaiian 0.927676, Dusun 0.641357, Maori 0.287588, Han 0.043477
=== Cluster 8 === 67,06%
Finnish 0.994898, Estonian 0.909607, Norwegian 0.801604, Saami 0.784912, Icelandic 0.756620, Russian 0.720639, Orcadian 0.695469
=== Cluster 9 ===
Irula 0.999710, Mala 0.999320, Madiga 0.981783, Kurumba 0.927560, Relli 0.847813, Yadava 0.813729, Kapu 0.799879
=== Cluster 10 ===
Papuan 0.617216, Australian 0.083339, Brahui 0.005109, Burmese 0.004785, Iranian 0.002466, Iraqi_Jew 0.002461, Spanish 0.002029
=== Cluster 11 ===
Bougainville 0.999710, Hawaiian 0.068656, Australian 0.066465, Maori 0.060560, Polish 0.009899, Turkish 0.005292, Relli 0.005074
=== Cluster 12 === 0,48%
Samaritan 0.999710, Jordanian 0.353358, Druze 0.050432, Palestinian 0.033024, Armenian 0.029628, Crete 0.027307, Iraqi_Jew 0.027049
=== Cluster 13 ===
Eskimo_Chaplin 0.999710, Eskimo_Sireniki 0.999710, Eskimo_Naukan 0.999710, Itelman 0.531599, Chukchi 0.328694, Mansi 0.063550, Cree 0.057187
=== Cluster 14 ===
Kusunda 0.999710, Kharia 0.022645, Bengali 0.016160, Uygur 0.013496, Xibo 0.011133, Burusho 0.010796, Altaian 0.008003,
=== Cluster 15 ===
Baka 0.999710, Biaka 0.999710, Bedzan 0.999710, Bakola 0.999710, Ngumba 0.113934, Hadza 0.028869, Lemande 0.024675
=== Cluster 16 ===
Kongo 0.970068, BantuHerero 0.931257, Lemande 0.913726, Ngumba 0.885784, Tikar_South 0.860974, BantuKenya 0.824821, Luhya 0.785443
=== Cluster 17 ===
Kalash 0.999710, Makrani 0.797299, Balochi 0.669852, Brahui 0.573722, Tajik 0.530399, Abkhasian 0.476852, Iranian 0.457920
=== Cluster 18 ===
Surui 0.999710, Karitiana 0.999710, Piapoco 0.225305, Chane 0.217623, Quechua 0.116014, Mayan 0.093664, Uygur 0.011748
=== Cluster 19 ===
Sherpa 0.999710, Tibetan 0.999710, Naxi 0.431203, Yi 0.412523, Tu 0.385580, Korean 0.283853, Burmese 0.265645
=== Cluster 20 ===
Papuan 0.382503, Maori 0.051235, Australian 0.028784, Kurumba 0.017935, Cambodian 0.012546, Druze 0.006851, Kharia 0.006151
=== Cluster 21 ===
Mbuti 0.999710, Aari 0.026915, Luo 0.026027, Ogiek 0.021844, Luhya 0.018236, Mende 0.014374, BantuKenya 0.012944
=== Cluster 22 ===
Somali 0.999710, Iraqw 0.874934, Rendille 0.853081, Agaw 0.728506, Amhara 0.668524, Elmolo 0.653965, Aari 0.640203
=== Cluster 23 ===
Ulchi 0.999710, Oroqen 0.999710, Yakut 0.991706, Even 0.953188, Hezhen 0.636270, Daur 0.506730, Altaian 0.483015
=== Cluster 24 ===
Onge 0.999710, Cambodian 0.028243, Kurumba 0.020265, Kharia 0.019102, Khonda_Dora 0.017259, Thai 0.016989, Burmese 0.014188
=== Cluster 25 ===
Australian 0.821141, Khonda_Dora 0.021864, Maori 0.008309, Thai 0.006606, Kurumba 0.004478, Mixtec 0.004315, Tu 0.003935
=== Cluster 26 ===
Dai 0.999710, Kinh 0.956314, Lahu 0.935765, Thai 0.873384, Cambodian 0.820438, Miao 0.779927, She 0.766636
=== Cluster 27 === 32,43%
Sardinian 0.999710, Spanish 0.587387, Albanian 0.566496, Basque 0.563693, Turkish 0.537726, Bergamo 0.534684, Crete 0.525510
=== Cluster 28 ===
Zapotec 0.999710, Mixe 0.999710, Nahua 0.999710, Mayan 0.906056, Quechua 0.883703, Mixtec 0.823184, Chane 0.782097
=== Cluster 29 ===
Khomani_San 0.999710, Ju_hoan_North 0.999707, BantuTswana 0.243889, Aari 0.066302, BantuHerero 0.053578, Sandawe 0.046474, Elmolo 0.017533
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