[ Raw: I ] [ With Maf / LD Pruning: II ] [ With Maf / LD Pruning / Geno: III: K 2 ] [ III: K 11 ] [ III: K 20 ] [ III: K 40 ] [ III: K 50 ] [ III: K 64 ] [ III: K Overclustering ] [ With SGDP Plus: IV: K 40, 50, 64 ]
[ K ] Over-Clustering in two or one
K = 59, "SampleName" = 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.165268 0.000010 0.000010 0.007380 0.000010 0.000010 0.000010 0.000010 0.000010 0.003622 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.004307 0.059493 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.752006 0.001504 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.005909 0.000010 0.000010, CV error (K=59): 1.10695, Converged in 118 iterations (47538.8 sec), Loglikelihood: -41834756.192718.
Cluster 6 ~ 16,53% (Sardinian 0.999420, Samaritan 0.999420, Basque 0.376768, Spanish 0.326445, Albanian 0.317494, Tuscan 0.257425, French 0.248223)
Cluster 9 ~ 0,74% (Lezgin 0.502096, Chechen 0.022215, Pathan 0.013317, Adygei 0.010868, Bulgarian 0.010360, North_Ossetian 0.009360, Uygur 0.008030)
Cluster 15 ~ 0,36% (Jordanian 0.340963, Iraqi_Jew 0.012741, Agaw 0.012416, Yemenite_Jew 0.012096, Turkish 0.008837, Crete 0.008605, Bulgarian 0.006787)
Cluster 25 ~ 0,43% (Orcadian 0.525787, Druze 0.517719, Albanian 0.042434, Crete 0.041542, Bulgarian 0.037509, Tuscan 0.029797, Chechen 0.025480)
Cluster 26 ~ 5,95% (Palestinian 0.693695, Russian 0.499715, Hungarian 0.062730, Polish 0.061274, [SampleName] 0.059493, Iraqi_Jew 0.056872, Czech 0.053756)
Cluster 36 ~ 75,2% (Norwegian 0.999420, Icelandic 0.871976, [SampleName] 0.752006, English 0.744290, Polish 0.714040, Saami 0.709662, Czech 0.700418)
Cluster 37 ~ 0,15% (Tajik 0.515573, Pathan 0.015664, Chechen 0.014080, Burusho 0.013789, Sindhi 0.012476, Uygur 0.008814, Makrani 0.008739)
Cluster 56 ~ 0,59% (Madiga 0.499715, Brahmin 0.015494, Chechen 0.012946, Brahui 0.008440, Kharia 0.008334, [SampleName] 0.005909, Punjabi 0.005683)
K = 60, first run, "SampleName" = 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.999410 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010, CV error (K=60): 1.15631, Converged in 123 iterations (51295.2 sec), Loglikelihood: -41730710.269966.
K = 60, second run, "SampleName" = 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.999410 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010, CV error (K=60): 1.15631, Converged in 123 iterations (51682.8 sec), Loglikelihood: -41730710.269966.
Cluster 22 ~ 99,94% ([SampleName] 0.999410, Norwegian 0.999410, Estonian 0.999410, Icelandic 0.797206, Saami 0.759977, Russian 0.626240, English 0.538525).
K = 61, "SampleName" = 0.264551 0.001395 0.000010 0.000010 0.000395 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.001933 0.000010 0.005123 0.001636 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.692033 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.011987 0.000010 0.000010 0.002099 0.018014 0.000010 0.000010 0.000010 0.000010 0.000333 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010, CV error (K=61): 1.14635, Converged in 107 iterations (46301.5 sec), Loglikelihood: -41671852.396626.
Cluster 0 [WEST MED] ~ 26,46% (Sardinian 0.999400, Spanish 0.692001, French 0.511764, Basque 0.491522, Albanian 0.301254, English 0.272232, [SampleName] 0.264551)
Cluster 1 [SIBIRIC INDIA DRIFT] ~ 0,14% (Saami 0.499705, Mansi 0.022338, Burmese 0.007787, Russian 0.007635, Chukchi 0.007222, Finnish 0.006426, Kashmiri_Pandit 0.006330)
Cluster 4 [LEV I] ~ 0,04% (BedouinB 0.999400, Samaritan 0.999400, Jordanian 0.378412, Saharawi 0.194706, Agaw 0.177299, Amhara 0.149370, Druze 0.133601)
Cluster 12 [AMD CHG EAS DRIFT] ~ 0,19% (Mixe 0.999400, Cree 0.034118, Mixtec 0.027210, Chechen 0.010408, Aleut 0.006828, Kashmiri_Pandit 0.004489, Lezgin 0.004071)
Cluster 14 [EAST MED I] ~ 0,51% (Jordanian 0.335289, Czech 0.012604, Armenian 0.010099, Crete 0.010041, Albanian 0.007530, Druze 0.007485, Hungarian 0.007085)
Cluster 15 [SAMARKAND DRIFT] ~ 0,16% (Tajik 0.499705, Pathan 0.017047, Chechen 0.015482, Burusho 0.014354, Sindhi 0.013751, Tubalar 0.013048, Uygur 0.010213)
Cluster 28 [EUR NORTH WEST] ~ 69,2% (Norwegian 0.999400, Estonian 0.995699, Finnish 0.965006, Icelandic 0.878746, Polish 0.735680, Orcadian 0.719370, Russian 0.719021)
Cluster 35 [EAST MED II] ~ 1,2% (North_Ossetian 0.537942, Palestinian 0.342862, Druze 0.035430, Bulgarian 0.028527, Hungarian 0.028019, Turkish 0.026496, Armenian 0.026356)
Cluster 38 [INDIA CAUCASUS DRIFT I] ~ 0,21% (Brahui 0.499705, Kashmiri_Pandit 0.013934, Uygur 0.011698, Armenian 0.010971, Makrani 0.010063, Burusho 0.008821, Icelandic 0.008123)
Cluster 39 [INDIA CAUCASUS DRIFT II] ~ 1,8% (Tajik 0.499705, Palestinian 0.376131, Burusho 0.031807, Maori 0.019944, Altaian 0.019720, Polish 0.018139, [SampleName] 0.018014)
Cluster 44 [INDIA CAUCASUS DRIFT III] ~ 0,03% (Makrani 0.516110, Balochi 0.023926, Icelandic 0.009074, Sindhi 0.008519, Kashmiri_Pandit 0.007993, Armenian 0.007855, Burusho 0.007792)
K = 63, "SampleName" = 0.000010 0.005843 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.003111 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.568202 0.000010 0.000010 0.001881 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.415622 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.003875 0.000906 0.000010 0.000010 0.000010, CV error (K=63): 1.18338, Converged in 115 iterations (53320.7 sec), Loglikelihood: -41554526.902119.
Cluster 1 ~ 0,58% (Sindhi 0.521348, Turkish 0.513432, Pathan 0.056416, Kashmiri_Pandit 0.047527, Chechen 0.043091, North_Ossetian 0.033433, Armenian 0.030981)
Cluster 9 ~ 0,31% (Yadava 0.540505, Hazara 0.016703, Kashmiri_Pandit 0.008934, Adygei 0.008809, Punjabi 0.007795, Tu 0.006974, Makrani 0.006627)
Cluster 30 ~ 56,82% (Finnish 0.999380, Saami 0.791818, Norwegian 0.610462, Russian 0.585707, [SampleName] 0.568202, Icelandic 0.559548, Polish 0.544370)
Cluster 33 ~ 0,19% (Saharawi 0.548417, Mozabite 0.071238, Norwegian 0.009330, Palestinian 0.009096, Amhara 0.008422, Iraqi_Jew 0.007442, Mixtec 0.007145)
Cluster 49 ~ 41,56% (Sardinian 0.999380, Basque 0.994313, French 0.617091, Spanish 0.497024, Bergamo 0.452981, Albanian 0.441151, [SampleName] 0.415622)
Cluster 58 ~ 0,39% (BedouinB 0.999374, Jordanian 0.366399, Palestinian 0.118052, Agaw 0.082969, Mozabite 0.081857, Armenian 0.069614, Saharawi 0.065124)
Cluster 59 ~ 0,09% (Iraqi_Jew 0.559594, Crete 0.521467, Agaw 0.046624, Tuscan 0.040834, Palestinian 0.037845, Greek 0.035224, Albanian 0.031321)
K = 65, "SampleName" = 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.231921 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.003256 0.008811 0.000010 0.000010 0.000010 0.001900 0.000010 0.000010 0.000010 0.000010 0.720475 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000261 0.000010 0.001100 0.000010 0.000010 0.031706 0.000010, CV error (K=65): 1.18127, Converged in 212 iterations (103941 sec), Loglikelihood: -41360222.591173.
Cluster 9 ~ 23,19% (Sardinian 0.999360, Tuscan 0.664337, Basque 0.508841, Spanish 0.430356, Bergamo 0.379189, Albanian 0.371927, French 0.332709)
Cluster 17 ~ 0,33% (Yadava 0.573155, Bengali 0.504927, Kashmiri_Pandit 0.026691, Brahmin 0.025665, Tu 0.013059, Hazara 0.012946, Burusho 0.011548)
Cluster 18 ~ 0,89% (Saami 0.999360, Mansi 0.067626, Russian 0.038561, Finnish 0.030824, Altaian 0.019669, Chukchi 0.014030, Tlingit 0.013572)
Cluster 22 ~ 0,19% (Tajik 0.499685, Burusho 0.014377, Chechen 0.014258, Sindhi 0.013605, Pathan 0.010222, Makrani 0.009219, Altaian 0.009063)
Cluster 27 ~ 72,05& (Estonian 0.994835, Norwegian 0.991289, Finnish 0.935222, Icelandic 0.872727, Polish 0.778175, Russian 0.773087, Orcadian 0.749853)
Cluster 58 ~ 0,03% (Balochi 0.999360, Makrani 0.026049, Kashmiri_Pandit 0.018737, Sindhi 0.010025, Iranian 0.008991, Punjabi 0.008183, Burusho 0.007743)
Cluster 60 ~ 0,11% (Mixe 0.999360, Nahua 0.280850, Zapotec 0.153726, Mixtec 0.137819, Mayan 0.049230, Aleut 0.017097, Chechen 0.011717)
Cluster 63 ~ 3,17% (Palestinian 0.404750, Jordanian 0.333127, Yemenite_Jew 0.068436, Iraqi_Jew 0.065141, Crete 0.047539, Saharawi 0.032500, [SampleName] 0.031706)
K = 66, "SampleName" = 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.999350 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010, CV error (K=66): 1.18274, Converged in 173 iterations (88286.9 sec), Loglikelihood: -41332278.897342.
Cluster 32 ~ 99,94% ([SampleName] 0.999350, Tuscan 0.524672, Bergamo 0.042559, Czech 0.038328, Albanian 0.037397, Saharawi 0.030193, North_Ossetian 0.029569)
K = 68, "SampleName" = 0.000010 0.000010 0.000010 0.025995 0.000010 0.000010 0.000010 0.000012 0.001213 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.016946 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.748575 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.020176 0.000010 0.000010 0.007481 0.000010 0.000010 0.000010 0.140637 0.000010 0.000010 0.000388 0.000010 0.001408 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.036600 0.000010, CV error (K=68): 1.22838, Converged in 88 iterations (48039.2 sec), Loglikelihood: -41229111.269241.
Cluster 3 ~ 2,6% (Turkish 0.516722, Jordanian 0.342108, Iraqi_Jew 0.037427, Rendille 0.030612, Chechen 0.029126, Druze 0.027941, Albanian 0.027833)
Cluster 8 ~ 0,12% (Makrani 0.499670, Brahui 0.014573, Icelandic 0.011211, Czech 0.008076, Uygur 0.006471, Sindhi 0.006403, Burusho 0.006032)
Cluster 17 ~ 1,69% (Tuscan 0.516762, Punjabi 0.249840, Brahmin 0.040864, Chukchi 0.033695, North_Ossetian 0.033591, Chechen 0.029975, Czech 0.029458)
Cluster 33 ~ 74,86% (Norwegian 0.960873, Finnish 0.954299, Estonian 0.935961, Icelandic 0.814750, [SampleName] 0.748575, Orcadian 0.748059, Russian 0.745152)
Cluster 46 ~ 2,02% (Hungarian 0.508969, Bulgarian 0.499670, Polish 0.061747, Czech 0.054604, Chechen 0.041582, Bergamo 0.036180, Russian 0.028906)
Cluster 49 ~ 0,75% (Iranian 0.515377, Jordanian 0.341642, Czech 0.035834, Iraqi_Jew 0.030367, Druze 0.025726, Palestinian 0.023831, English 0.023669)
Cluster 53 ~ 14,06% (Sardinian 0.999330, Basque 0.321351, Spanish 0.269296, Albanian 0.228447, Bergamo 0.219264, French 0.196899, English 0.172297)
Cluster 56 ~ 0,04% (Maori 0.999330, Hawaiian 0.061622, Adygei 0.005298, Tuscan 0.004723, Orcadian 0.004704, Amhara 0.004015, Turkish 0.003980)
Cluster 58 ~ 0,14% (BedouinB 0.999330, Agaw 0.057209, Palestinian 0.043846, Amhara 0.043784, Saharawi 0.038849, Iraqi_Jew 0.033930, Iraqw 0.033812)
Cluster 66 ~ 3,66% (Balochi 0.999330, Palestinian 0.374462, [SampleName] 0.036600, Iraqi_Jew 0.022644, Brahui 0.017701, Polish 0.017140, Orcadian 0.013677)
K = 72, "SampleName" = 0.000010 0.000010 0.000010 0.000010 0.000010 0.589165 0.001401 0.000010 0.000010 0.382351 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.007515 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.013252 0.000968 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.004697, CV error (K=72): 1.26566, Loglikelihood: -40873680.466408.
Cluster 5 ~ 58,92% (Norwegian 0.999290, Finnish 0.999290, Estonian 0.998422, [SampleName] 0.589165, Icelandic 0.575622, Orcadian 0.569098, Czech 0.538700).
Cluster 6 ~ 0,14% (Brahui 0.516423, Kashmiri_Pandit 0.014780, Uygur 0.011731, Armenian 0.011714, Makrani 0.010469, Burusho 0.010345, Balochi 0.008307).
Cluster 9 ~ 38,24% (Basque 0.999290, Bergamo 0.999290, Spanish 0.767286, Tuscan 0.402459, [SampeName] 0.382351, Icelandic 0.365903, Orcadian 0.358073).
Cluster 45 ~ 0,75% (Lezgin 0.504768, Pathan 0.012855, Bulgarian 0.010896, Abkhasian 0.010169, Uygur 0.008627, Armenian 0.007685, [SampleName] 0.007515).
Cluster 56 ~ 1,33% (Sardinian 0.343854, Albanian 0.015692, [SampleName] 0.013252, Bulgarian 0.010617, Czech 0.009672, Tuscan 0.008653, Crete 0.008050).
Cluster 57 ~ 0,1% (Turkish 0.499649, Armenian 0.016085, Bulgarian 0.015535, Crete 0.011432, Iraqi_Jew 0.010044, Hungarian 0.009113, Georgian 0.009053).
Cluster 71 ~ 0,47% (Jordanian 0.335397, Armenian 0.012194, Czech 0.011467, Crete 0.010306, Somali 0.009430, Brahui 0.007916, Palestinian 0.007880).
K = 80, "SampleName" = 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.000010 0.999210 0.000010 0.000010 0.000010, CV error (K=80): 1.33404, Loglikelihood: -40300403.723663.
Cluster 76 ~ 99,92% ([SampleName] 0.999210, Bulgarian 0.513275, Czech 0.039097, Chechen 0.034689, Albanian 0.034354, Turkish 0.034276, Hungarian 0.033031).
[ With SGDP Plus IV: K 40, 50, 64 ]
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E-Mail kriswagenseil [at] gmx [point] de